SNP Profiles matching SPA 16 [COL]

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_Input profile	TT	CC	AC	GG	CT	GG	AC	CG	AA	CT	GG	GG	AA	CC
1._SPA_9_[COL]	_	_	AC	GG	CT	_	AC	CG	AA	CT	_	_	AA	_
2._MATINA_2_/8	_	_	AC	GG	CT	_	AC	-	AA	CT	_	_	AA	_
3._GC-01-111-6-08	TT	CC	AC	GG	CT	GG	AA	CG	AG	CT	GG	GG	AA	CC
4._GC-01-111-6-08	TT	CC	AC	GG	_	GG	AA	CG	AG	CT	GG	GG	AA	CC
5._NA_45	_	_	AC	GG	CT	_	AA	CG	AG	CT	_	_	AA	_
6._GC-01-111-6-08	TT	CC	AC	GG	CC	GG	AA	CG	AG	CT	GG	GG	AA	CC
7._GC-01-111-6-08	TT	CC	AC	GG	CC	GG	AA	CG	AG	CT	GG	GG	AA	CC
8._GC-01-111-6-08	TT	CC	AC	GG	CC	GG	AA	CG	AG	CT	GG	GG	AA	CC
9._GC-01-111-6-08	TT	CC	AC	GG	CC	GG	AA	CG	AG	CT	GG	GG	AA	CC
10._GC-01-111-6-08	TT	CC	AC	GG	CC	GG	AA	CG	AG	CT	GG	GG	AA	CC
11._GC-01-111-6-08	TT	CC	AC	GG	CC	GG	AA	CG	AG	CT	GG	GG	AA	CC
12._NA_45	_	_	AC	GG	_	_	AA	CG	AG	CT	_	_	AA	_
13._RUQ_515	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
14._RUQ_1230	TT	CC	AC	GG	CT	GG	AA	CG	AG	CT	GG	GG	AT	CC
15._RUQ_1577	TT	CC	CC	GG	CC	GG	AC	CG	AG	CT	GG	GG	AA	CC
16._RUQ_1588	TT	CC	CC	GG	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
17._RUQ_877	TT	CC	CC	GG	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	TT	GG	GG	AA	CC	CC	TT	GG	GG	TT	CC	CG
1._SPA_9_[COL]	AA	CC	TT	GG	GG	AA	_	CC	_	GG	_	_	_	CG
2._MATINA_2_/8	AA	CC	TT	GG	GG	AA	_	CC	_	-	_	_	_	CG
3._GC-01-111-6-08	AA	CC	TT	GT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG
4._GC-01-111-6-08	AA	CC	TT	GT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG
5._NA_45	AA	CC	TT	GT	GG	AA	_	CC	_	GG	_	_	_	CG
6._GC-01-111-6-08	AA	CC	TT	GT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG
7._GC-01-111-6-08	AA	CC	TT	GT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG
8._GC-01-111-6-08	AA	CC	TT	GT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG
9._GC-01-111-6-08	AA	CC	TT	GT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG
10._GC-01-111-6-08	AA	CC	TT	GT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG
11._GC-01-111-6-08	AA	CC	TT	GT	GG	AA	CC	CC	CC	GG	GG	TT	CC	CG
12._NA_45	AA	CC	TT	GT	GG	AA	_	CC	_	GG	_	_	_	CG
13._RUQ_515	AA	CC	TT	GG	GG	AA	CC	CC	TT	GG	GG	TT	CC	GG
14._RUQ_1230	AA	CC	CT	GG	GG	AC	CC	CC	TT	GG	GG	TT	CC	CC
15._RUQ_1577	AA	CC	CT	GG	GG	AA	CC	CT	TT	GG	AG	TT	CC	CG
16._RUQ_1588	AA	CC	TT	GG	GG	AA	CC	CC	TT	GG	GG	TT	AC	GG
17._RUQ_877	AA	CC	-	GG	GG	AA	CC	CC	TT	GG	GG	TT	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CG	AA
1._SPA_9_[COL]	_	CC	AG	_	CC	_	_	_	GT	_	_	TT	CG	AA
2._MATINA_2_/8	CC	CC	AG	_	CC	_	_	_	GT	_	_	TT	CG	AA
3._GC-01-111-6-08	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CG	AA
4._GC-01-111-6-08	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CG	AA
5._NA_45	_	CC	AG	_	CC	_	_	_	TT	_	_	TT	CG	AA
6._GC-01-111-6-08	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CG	AA
7._GC-01-111-6-08	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CG	AA
8._GC-01-111-6-08	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CG	AA
9._GC-01-111-6-08	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CG	AA
10._GC-01-111-6-08	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CG	AA
11._GC-01-111-6-08	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CG	AA
12._NA_45	_	CC	AG	_	CC	_	_	_	TT	_	_	TT	CG	AA
13._RUQ_515	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CG	AA
14._RUQ_1230	CC	CC	AG	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AA
15._RUQ_1577	CC	CC	AG	CC	CC	GG	AG	TT	GT	TT	CC	TT	CC	AA
16._RUQ_1588	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CG	AA
17._RUQ_877	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	TT	CC	AA

Input profile: SPA_16_[COL] RUQ_691

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._SPA_9_[COL]

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

2._MATINA_2_/8

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B B106 T16

Dapeng Zhang, 2014

3._NA_45 GC-01-111-6-08

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

4._NA_45 GC-01-111-6-08

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

5._NA_45

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 9

Dapeng Zhang, 2016

6._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

7._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

9._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

10._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

11._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP2

12._NA_45

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 14 > F

Dapeng Zhang, 2016

13._IMC_27 RUQ_515

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._NA_26 RUQ_1230

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

15._NA_33 RUQ_1577

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

16._NA_710 RUQ_1588

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._CRU_100 RUQ_877

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484